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NIfTI-2 Data Format

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Documentation, Example Files and further information
This site is under construction.

Introduction


The NIfTI committee, in conjunction with public discussion on the NITRC forum, have created a final version for the NIfTI-2 format that is a very simple extension of the current NIfTI-1 format, but updated to allow 64-bit storage and addressing for large images and matrices.


It is intended that this format:

  • will enable the storage of large images and matrices, with all dimensions being coded by 64-bit integers rather than the current limitation of 16-bit┬ásigned integers (which currently gives a restrictive 32767 size limit in each dimension)
  • will be very simple to implement and update software (a couple of hours coding or less generally)
  • contains the same information and logic as a NIfTI-1 file (no new fields and all current fields still retained)
  • will support the existing file formats and naming: a .nii single-file, a .hdr/.img file-pair and their gzipped versions
  • has a very simple test (see below) to determine if the file is NIfTI-1 or NIfTI-2
  • does not replace NIfTI-1 in the short term but is supported alongside it

Documentation

  • Formal Specification
    • NIfTI-2 header file - C header file that defines the NIfTI-2 format (not final)

    • Description of NIfTI-2 Fields
      • field types and field order have been altered
      • extentions match those of NIfTI-1.1 when the extender bytes are 1 0 0 0
      • in the future, extenders may be added using other byte sequences

Test Data Sets

  • Test Data - A few valid structural (3D) files in NIfTI-2 format.

Supporting Software

  • AFNI, BrainVisa, BrainVoyager, Caret, Connectome Workbench, Fiswidgets, FreeSurfer, FSL, ITK, LONI-DIRAC, Mango, MRIcron, NiBabel, R, SPM and TractoR have all agreed to support the NIfTI-2 version in their upcoming releases, but that NIfTI-1 will remain a default output, or a configurable default, in the short-term

  • the sourceforge supporting libraries in niftilib will be updated so that they seemlessly support both NIfTI-1 and NIfTI-2

  • conversion utilities to and from NIfTI-1 will be made available via sourceforge as well as in some of the software packages mentioned above

Created by Rick Reynolds
Last modified 2013-12-23 15:15
 

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