set(NIFTI_NIFTILIB_NAME ${NIFTI_PACKAGE_PREFIX}niftiio) add_nifti_library(${NIFTI_NIFTILIB_NAME} nifti1_io.c ) target_link_libraries( ${NIFTI_NIFTILIB_NAME} PUBLIC ${NIFTI_PACKAGE_PREFIX}znz ${NIFTI_SYSTEM_MATH_LIB}) set_target_properties( ${NIFTI_NIFTILIB_NAME} PROPERTIES PUBLIC_HEADER "${CMAKE_CURRENT_LIST_DIR}/nifti1_io.h;${CMAKE_CURRENT_LIST_DIR}/nifti1.h" ) # Set library version when building shared libs. if(BUILD_SHARED_LIBS) get_lib_version_vars("nifti1_io_version.h" NIFTI_VERSION NIFTI_MAJOR_VERSION) set_target_properties(${NIFTI_NIFTILIB_NAME} PROPERTIES ${NIFTI_LIBRARY_PROPERTIES} VERSION ${NIFTI_VERSION} SOVERSION ${NIFTI_MAJOR_VERSION} ) endif() install_nifti_target(${NIFTI_NIFTILIB_NAME}) if(NIFTI_BUILD_APPLICATIONS) add_nifti_executable(${NIFTI_PACKAGE_PREFIX}nifti1_tool nifti1_tool.c) target_link_libraries(${NIFTI_PACKAGE_PREFIX}nifti1_tool PUBLIC ${NIFTI_NIFTILIB_NAME}) install_nifti_target(${NIFTI_PACKAGE_PREFIX}nifti1_tool) install_man_page( ${NIFTI_PACKAGE_PREFIX}nifti1_tool OPTS "--help-option=-help;--version-option=-ver_man;--no-info" ) endif() if(NIFTI_BUILD_TESTING AND NIFTI_BUILD_APPLICATIONS) add_executable(${NIFTI_PACKAGE_PREFIX}nifti1_test nifti1_test.c) target_link_libraries(${NIFTI_PACKAGE_PREFIX}nifti1_test PUBLIC ${NIFTI_NIFTILIB_NAME}) add_executable(nifti_first_test_program nifti_tester001.c) target_link_libraries(nifti_first_test_program ${NIFTI_PACKAGE_PREFIX}niftiio ) add_executable(nifti_second_test_program nifti_tester002.c) target_link_libraries(nifti_second_test_program ${NIFTI_PACKAGE_PREFIX}niftiio ) add_executable( ${NIFTI_PACKAGE_PREFIX}nifti_tester001 nifti_tester001.c) target_link_libraries(${NIFTI_PACKAGE_PREFIX}nifti_tester001 ${NIFTI_PACKAGE_PREFIX}niftiio ) add_executable( ${NIFTI_PACKAGE_PREFIX}nifti_tester002 nifti_tester002.c) target_link_libraries(${NIFTI_PACKAGE_PREFIX}nifti_tester002 ${NIFTI_PACKAGE_PREFIX}niftiio ) # setup data to be used for other tests add_test( NAME nifti_first_test COMMAND $ ) add_test( NAME nifti_second_test COMMAND $ ) # Do all regression tests set(TOOL_SUFFIX "1") # The suffxi used for this tool "1" for nifti1, and "" for nifti2 set(TEST_PREFIX "${NIFTI_PACKAGE_PREFIX}nifti${TOOL_SUFFIX}") set(TOOL_NAME "${TEST_PREFIX}_tool") add_test( NAME ${TEST_PREFIX}_test_help COMMAND $) add_test( NAME ${TEST_PREFIX}_test_n1 COMMAND $ -n1 ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/ATestReferenceImageForReadingAndWriting.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/n1 ) add_test( NAME ${TEST_PREFIX}_test_n2 COMMAND $ -n2 ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/ATestReferenceImageForReadingAndWriting.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/n2 ) add_test( NAME ${TEST_PREFIX}_test_a2 COMMAND $ -a2 ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/ATestReferenceImageForReadingAndWriting.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/a2 ) add_test( NAME ${TEST_PREFIX}_test_zn1 COMMAND $ -zn1 ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/ATestReferenceImageForReadingAndWriting.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/zn1 ) add_test( NAME ${TEST_PREFIX}_test_zn2 COMMAND $ -zn2 ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/ATestReferenceImageForReadingAndWriting.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/zn2 ) add_test( NAME ${TEST_PREFIX}_test_za2 COMMAND $ -za2 ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/ATestReferenceImageForReadingAndWriting.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/za2 ) add_test( NAME ${TEST_PREFIX}_ver COMMAND $ -nifti_ver) add_test( NAME ${TEST_PREFIX}_tool_ver COMMAND $ -ver) add_test( NAME ${TEST_PREFIX}_help COMMAND $ -help) add_test( NAME ${TEST_PREFIX}_nifti_hist COMMAND $ -nifti_hist) add_test( NAME ${TEST_PREFIX}_hist COMMAND $ -hist) add_test( NAME ${TEST_PREFIX}_disp_hdr COMMAND $ -disp_hdr -infiles ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/anat0.nii ) add_test( NAME ${TEST_PREFIX}_disp_nim COMMAND $ -disp_nim -infiles ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/anat0.nii ) add_test( NAME ${TEST_PREFIX}_disp_ext COMMAND $ -disp_ext -infiles ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/anat0.nii ) add_test( NAME ${TEST_PREFIX}_header_check COMMAND $ -check_hdr -infiles ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/anat0.nii ) add_test( NAME ${TEST_PREFIX}_nim_check COMMAND $ -check_nim -infiles ${fetch_testing_data_SOURCE_DIR}/nifti_regress_data/anat0.nii ) set_tests_properties(${TEST_PREFIX}_disp_hdr PROPERTIES LABELS NEEDS_DATA) set_tests_properties(${TEST_PREFIX}_disp_nim PROPERTIES LABELS NEEDS_DATA) set_tests_properties(${TEST_PREFIX}_disp_ext PROPERTIES LABELS NEEDS_DATA) set_tests_properties(${TEST_PREFIX}_header_check PROPERTIES LABELS NEEDS_DATA) set_tests_properties(${TEST_PREFIX}_nim_check PROPERTIES LABELS NEEDS_DATA) #The help screens always return 1; add_test( NAME ${NIFTI_PACKAGE_PREFIX}nifti1_tool1_help COMMAND $) add_test( NAME ${TEST_PREFIX}_tool_n1 COMMAND $ -disp_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/n1 ) add_test( NAME ${TEST_PREFIX}_tool_n2 COMMAND $ -disp_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/n2 ) add_test( NAME ${TEST_PREFIX}_tool_a2 COMMAND $ -disp_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/a2 ) add_test( NAME ${TEST_PREFIX}_tool_zn1 COMMAND $ -disp_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1 ) add_test( NAME ${TEST_PREFIX}_tool_zn2 COMMAND $ -disp_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/zn2 ) add_test( NAME ${TEST_PREFIX}_tool_za2 COMMAND $ -disp_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/za2 ) add_test( NAME ${TEST_PREFIX}_tool_diff_hdr COMMAND $ -diff_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1 ${CMAKE_CURRENT_BINARY_DIR}/zn1 ) add_test( NAME ${TEST_PREFIX}_tool_diff_nims COMMAND $ -diff_nim -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1 ${CMAKE_CURRENT_BINARY_DIR}/zn1 ) add_test( NAME ${TEST_PREFIX}_tool_copy_brick_list COMMAND $ -cbl -prefix cbl_zn1.nii -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz[0,1]) add_test( NAME ${TEST_PREFIX}_tool_disp_ci COMMAND $ -disp_ci 2 2 2 -1 0 0 0 -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz ) add_test( NAME ${TEST_PREFIX}_tool_disp_ts COMMAND $ -disp_ts 2 2 2 -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz ) add_test( NAME ${TEST_PREFIX}_tool_strip_extras COMMAND $ -strip_extras -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz ) # This test needs a file that has extensions to remove #add_test( NAME ${TEST_PREFIX}_tool_rm_ext /bin/sh ${NIFTI_SOURCE_DIR}/niftilib/rmthenrun rm_ext.nii COMMAND $ -rm_ext ALL -prefix rm_ext.nii -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz ) add_test( NAME ${TEST_PREFIX}_tool_check_hdr COMMAND $ -check_hdr -infile ${CMAKE_CURRENT_BINARY_DIR}/za2 ) add_test( NAME ${TEST_PREFIX}_tool_check_nim COMMAND $ -check_nim -infile ${CMAKE_CURRENT_BINARY_DIR}/za2 ) #add_test( NAME ${TEST_PREFIX}_tool_copy_collapsed_image /bin/sh ${NIFTI_SOURCE_DIR}/niftilib/rmthenrun cci_zn1.nii COMMAND $ -cci 2 2 2 -1 -1 -1 -1 -prefix cci_zn1.nii -infile ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz ) add_test( NAME cleanup_n1 COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/n1.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/n1.nii ) add_test( NAME cleanup_n2 COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/n2.nii ${CMAKE_CURRENT_BINARY_DIR}/n2.hdr ${CMAKE_CURRENT_BINARY_DIR}/n2.img) add_test( NAME cleanup_a2 COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/a2.img ${CMAKE_CURRENT_BINARY_DIR}/a2.hdr ) add_test( NAME cleanup_zn1 COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/zn1.nii.gz ${CMAKE_CURRENT_BINARY_DIR}/cbl_zn1.nii ) add_test( NAME cleanup_zn2 COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/zn2.img.gz ${CMAKE_CURRENT_BINARY_DIR}/zn2.hdr.gz ) add_test( NAME cleanup_za2 COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/za2.img.gz ${CMAKE_CURRENT_BINARY_DIR}/za2.hdr.gz ) # https://crascit.com/2016/10/18/test-fixtures-with-cmake-ctest/ as of cmake 3.7 fixtures are supported foreach( testsuffix "n1" "n2" "a2" "zn1" "zn2" "za2") #message(STATUS "Setting up ${testsuffix}") set_tests_properties( ${TEST_PREFIX}_tool_${testsuffix} PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_${testsuffix} ) set_tests_properties( ${TEST_PREFIX}_test_${testsuffix} PROPERTIES FIXTURES_SETUP NiftiTestGeneratedFiles_${testsuffix}) message(STATUS "NiftiTestGeneratedFiles_${testsuffix}" ) set_tests_properties( ${TEST_PREFIX}_tool_${testsuffix} ${TEST_PREFIX}_test_${testsuffix} PROPERTIES RESOURCE_LOCK Serial_${testsuffix} LABELS NEEDS_DATA ) set_tests_properties(cleanup_${testsuffix} PROPERTIES FIXTURES_CLEANUP NiftiTestGeneratedFiles_${testsuffix} ) endforeach() set_tests_properties( ${TEST_PREFIX}_tool_diff_hdr PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_zn1) set_tests_properties( ${TEST_PREFIX}_tool_diff_nims PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_zn1) set_tests_properties( ${TEST_PREFIX}_tool_copy_brick_list PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_zn1) set_tests_properties( ${TEST_PREFIX}_tool_disp_ci PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_zn1) set_tests_properties( ${TEST_PREFIX}_tool_disp_ts PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_zn1) set_tests_properties( ${TEST_PREFIX}_tool_strip_extras PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_zn1) set_tests_properties( ${TEST_PREFIX}_tool_check_hdr PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_za2 LABELS NEEDS_DATA) set_tests_properties( ${TEST_PREFIX}_tool_check_nim PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFiles_za2 LABELS NEEDS_DATA) #set_tests_properties( ${TEST_PREFIX}_tool_copy_collapsed_image PROPERTIES FIXTURES_REQUIRED NiftiTestGeneratedFileszn1) set_tests_properties( ${TEST_PREFIX}_tool_diff_hdr ${TEST_PREFIX}_tool_diff_nims ${TEST_PREFIX}_tool_copy_brick_list ${TEST_PREFIX}_tool_disp_ci ${TEST_PREFIX}_tool_disp_ts ${TEST_PREFIX}_tool_strip_extras PROPERTIES RESOURCE_LOCK Serial_zn1 LABELS NEEDS_DATA ) #==END NIFTI1 and NIFTI2 common tests ============================================ unset(TEST_SUFFIX) unset(TEST_PREFIX) unset(TOOL_NAME) endif()